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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8653442_8654635_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8653442 - 8654635
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TCTTTCTTAATA
Flanking Amino Acid:
QNNLLPSRQFGYIVLTTSAG
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
80
0.67
0.8
77.5
29.8
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
81.3
0.98
1
82.43
32.9

Associated Gene:

Gene:
RPS15A
Ensembl Gene ID:
ENSAPLG00000011588
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012077
8651006 - 8654729
3724