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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_86808_89951_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86808 - 89951
Intron Length:
3144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTACTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTCCCTACTT
Flanking Amino Acid:
ILLFSYATSKATGHIQEFGC
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.1
0.65
0.8
72.3
31.3
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
58.7
0.35
2
80.27
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015269
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015916
78964 - 93511
14548