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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8824136_8832200_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8824136 - 8832200
Intron Length:
8065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTGGGCTTATTT
Flanking Amino Acid:
TFSNRQPIKQEEALKYHSGP
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
83.9
0.76
0.8
76.2
37.8
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
49.3
0.03
2.1
71.02
46.6

Associated Gene:

Gene:
XYLT1
Ensembl Gene ID:
ENSAPLG00000010819
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011300
8823813 - 8916266
92454