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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8846224_8848942_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8846224 - 8848942
Intron Length:
2719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
AAGGCCTGAATG
Flanking Amino Acid:
FYSYTLLPAESFFHTVLENS
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
50.3
-0.1
1.6
51.81
42.8

Associated Gene:

Gene:
XYLT1
Ensembl Gene ID:
ENSAPLG00000010819
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011300
8823813 - 8916266
92454