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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8849160_8861482_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8849160 - 8861482
Intron Length:
12323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTACTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGGTTTTGTACT
Flanking Amino Acid:
FLKSHGRDNARFIRKQGLDR
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
73.6
0.53
0.9
70.2
36.3
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
49.3
0.02
1.8
68.66
42.6

Associated Gene:

Gene:
XYLT1
Ensembl Gene ID:
ENSAPLG00000010819
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011300
8823813 - 8916266
92454