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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8861564_8883876_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8861564 - 8883876
Intron Length:
22313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGTC
5'SS Class:
major
3'SS Sequence:
CTTTCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CACTATGTAATT
Flanking Amino Acid:
INLSAADYPIRTNDQLVAFL
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
66.8
37.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.2
0.77
0.7
76.7
31.9
Minor 5ss
33.3
-1.9
3.7
50
46.5
Minor BPS
45.9
-0.2
2.1
61.11
43.5

Associated Gene:

Gene:
XYLT1
Ensembl Gene ID:
ENSAPLG00000010819
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011300
8823813 - 8916266
92454