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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8983033_8985947_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8983033 - 8985947
Intron Length:
2915

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TCGAGAAGATTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATTTCGCTGATA
Flanking Amino Acid:
LFLFQTKTTSAVCFSQKLSC
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
68.3
42.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
47.9
-0.1
1.1
41.7
42
Minor 5ss
22.6
-3.2
3.7
31.6
42.6
Minor BPS
48.6
-0.1
2.3
69.24
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018994
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027624
8982909 - 8985994
3086