Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_90066_93194_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

90066 - 93194

Intron Length:

3129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTCATTC

5'SS Class:

weak_major

3'SS Sequence:

CTTTTGTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GAGCTTTTAATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.3

60.7

39.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.1

0.66

76.3

37.7

Minor 5ss

51.8

0.06

2.4

68.9

41.9

Minor BPS

0.22

1.2

58.04

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015269

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015916

78964 - 93511

14548