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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9335235_9335635_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9335235 - 9335635
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCCCTTTTATT
Flanking Amino Acid:
LLLAGYNHDKLIPLLLQLTT
Intron Amino Acid Position:
1166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
72.3
39.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.7
0.74
0.8
77.1
37.1
Minor 5ss
33.1
-1.9
3.2
43.3
44.4
Minor BPS
61
0.43
1.6
77.02
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298