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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9336773_9336995_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9336773 - 9336995
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATACCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTGAATTAATT
Flanking Amino Acid:
HFPPLLRDGENYVVLLDSTL
Intron Amino Acid Position:
1095

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.6
0.6
0.9
70.1
35.4
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
49.7
0.06
1.9
68.34
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298