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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9337098_9339073_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9337098 - 9339073
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
CTTTCCTTCACA
Flanking Amino Acid:
TSSEYLSTLCVKLYKSENLD
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
70.6
36.1
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
84.7
0.78
0.7
79.5
26
Minor 5ss
42.5
-0.8
2.7
51.5
44.9
Minor BPS
75
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298