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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9339185_9340636_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9339185 - 9340636
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
CTGTCTATAAAT
Flanking Amino Acid:
RALPQHRAIEVGNSDIGDIN
Intron Amino Acid Position:
1024

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
86.4
28.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
82
0.72
0.9
76.8
37.3
Minor 5ss
38.4
-1.3
2.7
52.9
43.7
Minor BPS
56.8
0.29
1.8
73.85
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298