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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9341620_9342234_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9341620 - 9342234
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAC
U12 Branch Point Sequence:
TCTGTAGCAATT
Flanking Amino Acid:
IQITGYRTAYSCYGTVSSLN
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
78
38.6
Major BPS
65.1
0.38
1.4
77.4
37.4
Major PPT
82
0.72
0.7
74.7
30.6
Minor 5ss
30.5
-2.2
2.5
34.7
40.9
Minor BPS
40.4
-0.6
2.3
60.14
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298