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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9342363_9343013_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9342363 - 9343013
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
DNGMLTFSNLSPGQYYFKPM
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.8
0.89
0.7
84.9
29.8
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298