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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9345689_9348146_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9345689 - 9348146
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
AGGAGCTTATTT
Flanking Amino Acid:
DKLMDVTITIKSSIDSEPDL
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.2
31
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
35.5
-1.6
2.9
42.3
38.1
Minor BPS
45.8
-0.2
2
59.65
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298