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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9348243_9349344_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9348243 - 9349344
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGAGCA
5'SS Class:
major
3'SS Sequence:
ATTTGATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTTGTTAATT
Flanking Amino Acid:
QFEHEYYTYDTSSPSILTLT
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
68.7
36.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.8
0.69
0.9
73.5
40.4
Minor 5ss
32.1
-2
3.3
39
39.6
Minor BPS
64.7
0.54
2
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298