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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9349409_9350297_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9349409 - 9350297
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
TTAATGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TATTCCTTTACT
Flanking Amino Acid:
GVNRFCLSKPGVYEVTPRSC
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
79.2
0.66
1
72.5
42.2
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
81
1.06
1.5
93.58
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298