Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9350800_9351615_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9350800 - 9351615

Intron Length:

816

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAGGAATA

5'SS Class:

major

3'SS Sequence:

ATGTGTATTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTACATTACTA

Flanking Amino Acid:

FENVPPGKYKISIVHEDWCW

Intron Amino Acid Position:

546

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

74.5

35.9

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

68.9

0.43

59.8

45.4

Minor 5ss

37.4

-1.4

3.3

48.8

41.6

Minor BPS

56.5

0.2

1.9

73.33

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010079

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010599

9334618 - 9360915

26298