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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9352758_9353522_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9352758 - 9353522
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTACTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATGTCCTGTACT
Flanking Amino Acid:
KAKSGIYNIQVIIPEAETRA
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
71.7
0.49
0.9
64.9
36.1
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
61.8
0.45
1.8
79.38
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298