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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9353701_9354250_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9353701 - 9354250
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTTATTTTACA
Flanking Amino Acid:
TPQLANIIATGFSVCGRISV
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
86.7
0.82
0.8
80.6
36.1
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
60.4
0.32
1.8
74.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298