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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9354402_9354837_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9354402 - 9354837
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTTTTTAACT
Flanking Amino Acid:
ATVTLNNQIKVKTKADGSFR
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.7
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.6
0.8
0.8
78.2
39.7
Minor 5ss
47.1
-0.3
2.6
65.5
45.8
Minor BPS
76.2
0.9
1.1
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298