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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9354944_9355559_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9354944 - 9355559
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATAACTTTATTT
Flanking Amino Acid:
FVEHDSLQIEPIFHVMGFSV
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
88.3
0.86
0.7
86.1
26.6
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
57.2
0.31
1.6
71.88
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298