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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9355650_9356426_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9355650 - 9356426
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
TTCTTAGGAATC
Flanking Amino Acid:
LSLPSGKYTVIPFYRGERIT
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
84.5
0.78
0.8
81.3
30.7
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
43.9
-0.4
2.2
59.51
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010079
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010599
9334618 - 9360915
26298