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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_935848_937107_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
935848 - 937107
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CCTCCCACACCC
Flanking Amino Acid:
CWASKDSSNLGLADIAF*
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
60.6
44.2
Major BPS
50
0
1.2
61.8
35.9
Major PPT
89.4
0.89
0.6
88.9
20.3
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
43
-0.5
2
53.02
44.4

Associated Gene:

Gene:
LCMT1
Ensembl Gene ID:
ENSAPLG00000010710
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011202
935379 - 941934
6556