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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9362974_9363331_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9362974 - 9363331
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
GTCTCCGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTATTTCAACA
Flanking Amino Acid:
RMSHIFKTKMVLGFLLVTLC
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59
39.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.2
0.43
0.9
65.5
36.1
Minor 5ss
28.1
-2.5
3.5
33.6
44.4
Minor BPS
57.9
0.24
1.6
67.56
39.2

Associated Gene:

Gene:
ABCC6
Ensembl Gene ID:
ENSAPLG00000009046
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009507
9362054 - 9384307
22254