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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9363458_9364054_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9363458 - 9364054
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTCTT
5'SS Class:
major
3'SS Sequence:
TACTTCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATATATTT
Flanking Amino Acid:
ISPAVLGITMILAMFLTQAE
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.4
38.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.5
0.64
0.8
72.5
31.9
Minor 5ss
40.4
-1.1
3.1
56.3
42.2
Minor BPS
48
-0
2
72.17
39

Associated Gene:

Gene:
ABCC6
Ensembl Gene ID:
ENSAPLG00000009046
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009507
9362054 - 9384307
22254