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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9364197_9365937_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9364197 - 9365937
Intron Length:
1741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAAATCA
5'SS Class:
major
3'SS Sequence:
ACTTACCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
CTTACCTTACAG
Flanking Amino Acid:
SKIQHGLERVNVCVFSRLVW
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1
63.5
30.2
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
77.4
0.62
0.9
69.4
36
Minor 5ss
33.8
-1.8
3.1
39.4
40.3
Minor BPS
53.2
-0
1.9
61.29
46.1

Associated Gene:

Gene:
ABCC6
Ensembl Gene ID:
ENSAPLG00000009046
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009507
9362054 - 9384307
22254