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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9366863_9367254_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9366863 - 9367254
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATCAATA
Flanking Amino Acid:
VFLFSIPKILSLFLEFIEDQ
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74
36.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
89.2
0.88
0.8
81.2
36.5
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
57
0.22
1.8
69.05
36.7

Associated Gene:

Gene:
ABCC6
Ensembl Gene ID:
ENSAPLG00000009046
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009507
9362054 - 9384307
22254