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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_937206_938760_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
937206 - 938760
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCTG
5'SS Class:
major
3'SS Sequence:
TTTGTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCCAGTTTAAAT
Flanking Amino Acid:
YSSLPQADVKRIEELEFLDE
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
58.9
45.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.2
0.72
0.8
76.9
32
Minor 5ss
40.5
-1.1
3.3
55.9
48.3
Minor BPS
49
0
1.9
65.19
45.5

Associated Gene:

Gene:
LCMT1
Ensembl Gene ID:
ENSAPLG00000010710
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011202
935379 - 941934
6556