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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9372539_9373012_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9372539 - 9373012
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TATTCTTCCATT
Flanking Amino Acid:
EQMDGCVTMKGTAAYVPQQA
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
80.3
0.68
0.8
75.6
32.9
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
54.4
0.22
2
77.09
39.9

Associated Gene:

Gene:
ABCC6
Ensembl Gene ID:
ENSAPLG00000009046
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009507
9362054 - 9384307
22254