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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9375068_9376845_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9375068 - 9376845
Intron Length:
1778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTCATTTGT
5'SS Class:
weak_major
3'SS Sequence:
CATCTTTCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCCTCTCATCT
Flanking Amino Acid:
KLELFYPDLSRYTSKGQARD
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.8
0.04
1.3
56.6
43.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
65.6
0.35
1
63.8
36.8
Minor 5ss
39.6
-1.2
2.9
55.9
42.3
Minor BPS
47.9
-0
1.8
64.89
45.6

Associated Gene:

Gene:
ABCC6
Ensembl Gene ID:
ENSAPLG00000009046
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009507
9362054 - 9384307
22254