Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9380399_9380974_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9380399 - 9380974

Intron Length:

576

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTAG

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCCTGCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TCTGCCCTAACA

Flanking Amino Acid:

AGFSVSYALQITGVLNWMVR

Intron Amino Acid Position:

1090

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

1.1

74.9

38.1

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

74.7

0.56

0.9

36.6

Minor 5ss

45.1

-0.5

2.6

57.8

46.8

Minor BPS

64.9

0.46

1.8

75.88

41.5

Associated Gene:

Gene:

ABCC6

Ensembl Gene ID:

ENSAPLG00000009046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009507

9362054 - 9384307

22254