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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9381077_9381802_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9381077 - 9381802
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATAGC
5'SS Class:
major
3'SS Sequence:
ATCATCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTTATCATCT
Flanking Amino Acid:
VKEYSRTPKEAPWTLNVKLQ
Intron Amino Acid Position:
1124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
69.5
41.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
66.5
0.37
1
58.5
42.4
Minor 5ss
34
-1.8
3.1
45.3
42.8
Minor BPS
48.5
-0
2
73
43.8

Associated Gene:

Gene:
ABCC6
Ensembl Gene ID:
ENSAPLG00000009046
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009507
9362054 - 9384307
22254