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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9389773_9391064_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9389773 - 9391064
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
CCTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCC
Flanking Amino Acid:
HRLNTIMDYTRVLVLDRGEV
Intron Amino Acid Position:
1483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85
0.79
0.8
78.9
33.1
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
60.8
0.32
1.7
73.08
38.7

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240