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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9391260_9392066_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9391260 - 9392066
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CCCATCTATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTCCTCCACC
Flanking Amino Acid:
HECAEGGENLSVGQRQLVCL
Intron Amino Acid Position:
1418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
74.3
38
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
66.8
0.38
0.9
61.6
33.8
Minor 5ss
32.5
-2
3
40.8
45.4
Minor BPS
67.3
0.53
2
82.89
37.2

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240