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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9393317_9394530_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9393317 - 9394530
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCTAT
U12 Branch Point Sequence:
TTCTTTCCAACA
Flanking Amino Acid:
INVTINGGEKVGIVGRTGAG
Intron Amino Acid Position:
1310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
56.4
0.16
1.3
56.1
41.3
Major PPT
81
0.7
0.8
77.7
29.7
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
50.4
0.01
1.9
67.52
39.2

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240