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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9394678_9395751_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9394678 - 9395751
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
GTTGTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
AGGAACTGATCA
Flanking Amino Acid:
VKEYAEMEKEAEWSIEQTAP
Intron Amino Acid Position:
1261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
43.1
-0.5
1.8
49.78
40.3

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240