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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9395854_9396208_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9395854 - 9396208
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCTTTTAAACT
Flanking Amino Acid:
VGLSVSYSLQITAYLNWLVR
Intron Amino Acid Position:
1227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
60.9
0.42
1.7
75.46
41.9

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240