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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9396336_9396820_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9396336 - 9396820
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATGAT
U12 Branch Point Sequence:
TTACTGGTAAGA
Flanking Amino Acid:
KAYYPSIVANRWLAVRLEFV
Intron Amino Acid Position:
1184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.8
38.2
Major BPS
59.1
0.23
1.3
51.7
43.9
Major PPT
82.2
0.72
0.8
76.3
32.3
Minor 5ss
34.1
-1.8
3.5
47.2
48.2
Minor BPS
40
-0.7
2.6
56.69
42.7

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240