Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9398201_9398837_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9398201 - 9398837

Intron Length:

637

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGCCTG

5'SS Class:

major

3'SS Sequence:

TCTTCTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAA

U12 Branch Point Sequence:

CAGTTAAAAACA

Flanking Amino Acid:

GVYGALGISQGIAVFGYSMV

Intron Amino Acid Position:

1014

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.41

1.2

57.4

46.9

Major BPS

61.4

0.28

1.1

67.9

34.4

Major PPT

84.3

0.77

0.8

76.4

37.6

Minor 5ss

43.9

-0.7

2.8

56.6

47.6

Minor BPS

41.5

-0.6

49.92

Associated Gene:

Gene:

ABCC1

Ensembl Gene ID:

ENSAPLG00000007477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007981

9389664 - 9432903

43240