Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9400135_9401931_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9400135 - 9401931

Intron Length:

1797

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGTGCACT

5'SS Class:

major

3'SS Sequence:

GTATTTGTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TTTTCCAAGACT

Flanking Amino Acid:

VNEAPGKLMHRQLSNSSTYS

Intron Amino Acid Position:

898

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

0.9

73.2

37.5

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

70.6

0.46

1.1

65.8

44.1

Minor 5ss

42.7

-0.8

2.8

58.1

46.3

Minor BPS

63.4

0.5

88.48

36.5

Associated Gene:

Gene:

ABCC1

Ensembl Gene ID:

ENSAPLG00000007477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007981

9389664 - 9432903

43240