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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9408091_9408480_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9408091 - 9408480
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTACTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTTCTTTTACT
Flanking Amino Acid:
IGPKGILKNKTRVLVTHAVN
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.3
34.7
Major BPS
74.2
0.6
1
67
39.4
Major PPT
78.7
0.65
0.9
74.7
34.9
Minor 5ss
35
-1.7
3.5
48.5
42.1
Minor BPS
80.4
1.04
1.5
96.11
29.5

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240