Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9414115_9416648_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9414115 - 9416648

Intron Length:

2534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAC

U12 Branch Point Sequence:

CTTGCTGTAACC

Flanking Amino Acid:

TFTWVCAPFLVALSTFAVYV

Intron Amino Acid Position:

552

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

28.8

Major BPS

0.35

72.7

31.8

Major PPT

83.1

0.74

0.9

80.3

37.3

Minor 5ss

32.1

-2

3.1

36.8

41.9

Minor BPS

54.2

0.11

2.1

69.26

Associated Gene:

Gene:

ABCC1

Ensembl Gene ID:

ENSAPLG00000007477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007981

9389664 - 9432903

43240