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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9418287_9418991_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9418287 - 9418991
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAATAAAT
Flanking Amino Acid:
VILALYLLWRNLGPSVLAGV
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
94.2
0.99
0.5
93.1
16
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
48.6
-0
2.3
79.82
41.4

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240