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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9420041_9420761_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9420041 - 9420761
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGATTGCTAATT
Flanking Amino Acid:
LLMFTGPEILKLLINFVNDK
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.5
27.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.5
0.62
0.7
71.6
26.5
Minor 5ss
41.3
-1
3.1
56.6
42
Minor BPS
45.5
-0.2
2.2
64.34
40.1

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240