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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9420987_9422292_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9420987 - 9422292
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATATTTTAACT
Flanking Amino Acid:
NWAKEWAKTKRQPLNILYSS
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.8
0.69
0.8
77.8
34.5
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
75.1
0.87
1.2
85.48
34.3

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240