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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9427815_9428979_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9427815 - 9428979
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTGTTTATCC
Flanking Amino Acid:
ISPTVLGITMLLATFLIQYE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.2
0.66
0.9
73.4
36.2
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
55.1
0.14
2
69.42
42.8

Associated Gene:

Gene:
ABCC1
Ensembl Gene ID:
ENSAPLG00000007477
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007981
9389664 - 9432903
43240