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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9447105_9448297_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9447105 - 9448297
Intron Length:
1193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTCTTAAGAATT
Flanking Amino Acid:
YKYTASVLTAEAGQPEMPLD
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
44.8
-0.3
1.9
63.48
40.6

Associated Gene:

Gene:
FOPNL
Ensembl Gene ID:
ENSAPLG00000007471
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007743
9446593 - 9451738
5146