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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9448383_9449229_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9448383 - 9449229
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGGATT
5'SS Class:
major
3'SS Sequence:
CTGTCTTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GCTGCTTTTACT
Flanking Amino Acid:
NIVEDANAKSVPLLYGIISH
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
75.5
40.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.8
0.42
1
65.9
39.6
Minor 5ss
40.2
-1.1
3.4
58.5
45.8
Minor BPS
57.5
0.32
1.8
72.27
44.8

Associated Gene:

Gene:
FOPNL
Ensembl Gene ID:
ENSAPLG00000007471
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007743
9446593 - 9451738
5146