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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9464261_9468897_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9464261 - 9468897
Intron Length:
4637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTGATT
Flanking Amino Acid:
RERYFSGLIYTYSGLFCVVI
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.1
0.9
0.7
84.7
29.5
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
71.1
0.75
1.4
87.7
31.2

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462